BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005E01SP1|AL425377
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1530 1589 0.0
3x_Contig76 284 2e-76
>3x_Contig1530
Length = 6216
Score = 1589 bits (799), Expect = 0.0
Identities = 930/972 (95%), Gaps = 4/972 (0%)
Strand = Plus / Plus
Query: 2 atcagttttctttctctcatcctaaacacaatggagttttttctctatgamctacttccc 61
|||| ||||||||||||||||||||||||||| | |||||||||||| | |||||||||
Sbjct: 1522 atcaattttctttctctcatcctaaacacaataaatttttttctctataaactacttccc 1581
Query: 62 tggagagctcgtctctccagtggacataaacacaaacaacattttgcattatgaaamact 121
| | ||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 1582 taaaaagctcttctctccagttaacataaacacaaacaacattttgcattatcaaaaact 1641
Query: 122 atttatcaagaaatttaatattcaaaactttcaacaacggatctcttggttctcgcatcg 181
||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1642 atttatcaataaatttaatattcaaaactttcaacaacttatctcttttttctcgcatct 1701
Query: 182 atgaagaacgcagcgaattgcgatatgtattgtgaattgcagattttcgtgaatcatcaa 241
|| || ||| || | |||||| |||| |||| | |||| || |||||| | |||||||||
Sbjct: 1702 ataaataacccacctaattgctatatttatttttaatttcatattttcttaaatcatcaa 1761
Query: 242 atctttgaacgcacattgcgccctctggtattccaggggg-catgcctgtttgagcgtca 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1762 atctttgaacgcacattgcgccctctggtattccaggggggcatgcctgtttgagcgtca 1821
Query: 301 tttctctctcaaacctttgggtttggtagtgagtgatactcgtttttcgggttaacttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1822 tttctctctcaaacctttgggtttggtagtgagtgatactcgtttttcgggttaacttga 1881
Query: 361 magtggctagccgttgccttctgcgtgagcggngctgcgtgtcaagtctatggactcgac 420
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 1882 aagtggctagccgttgccttctgcgtgagcagggctgcgtgtcaagtctatggactcgac 1941
Query: 421 tcttgcacatctacgtcttaggtttgcgccaattcgtggtaagctagggtcaatgagctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tcttgcacatctacgtcttaggtttgcgccaattcgtggtaagctagggtcaatgagctt 2001
Query: 481 ataggtgttataaagactcgctggtgtttgtctccttgaggcatacggcttaatcaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2002 ataggtgttataaagactcgctggtgtttgtctccttgaggcatacggcttaatcaaaac 2061
Query: 541 tctcaaagtttgacctcaaatcaggtaggaatacccgctgaacttaagcatatcaataag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2062 tctcaaagtttgacctcaaatcaggtaggaatacccgctgaacttaagcatatcaataag 2121
Query: 601 cggaggaaaagamaccaaccgggattgccttagtaacggcgagtgaagcggcaaaagctc 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2122 cggaggaaaagaaaccaaccgggattgccttagtaacggcgagtgaagcggcaaaagctc 2181
Query: 661 aaatttgaaatctggcgtcttcgacgtccgagttgtaatttgaagaaggcaactttgtag 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2182 aaatttgaaatct-gcgtcttcgacgtccgagttgtaatttgaagaaggcaactttgtag 2240
Query: 721 ctggtccttgtctatgttccttggaacaggacgtcatagagggtgagaatcccgtgtggc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 ctggtccttgtctatgttccttggaacaggacgtcatagagggtgagaatcccgtgtggc 2300
Query: 781 gaggatcccagttatttgtaaagtgctttcgacgagtcgagttgtttgggaatgcagctc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301 gaggatcccagttatttgtaaagtgctttcgacgagtcgagttgtttgggaatgcagctc 2360
Query: 841 taagtgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2361 taagtgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaag 2420
Query: 901 tacagtgatggaaagatg-aaagaactttgaaaagagagtg-aaaagtacgtgaaattgt 958
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2421 tacagtgatggaaagatgaaaagaactttgaaaagagagtgaaaaagtacgtgaaattgt 2480
Query: 959 tgaaagggargg 970
||||||||| ||
Sbjct: 2481 tgaaagggaagg 2492
>3x_Contig76
Length = 894
Score = 284 bits (143), Expect = 2e-76
Identities = 600/753 (79%), Gaps = 1/753 (0%)
Strand = Plus / Plus
Query: 80 agtggacataaacacaaacaacattttgcattatgaaamactatttatcaagaaatttaa 139
|||||| ||||| | ||| || |||||| ||||||||| | ||||||| |||||||||||
Sbjct: 15 agtggaaataaaaaaaaaaaaaattttgaattatgaaaaaatatttataaagaaatttaa 74
Query: 140 tattcaaaactttcaacaacggatctcttggttctcgcatcgatgaagaacgcagcgaat 199
|||| |||| ||| || || |||| | |||||| | | || ||||||||| | || ||||
Sbjct: 75 tattaaaaaatttaaaaaaaggatatattggttatagaatagatgaagaaagaagagaat 134
Query: 200 tgcgatatgtattgtgaattgcagattttcgtgaatcatcaaatctttgaacgcacattg 259
|| |||||||||||||||||| ||||||| |||||| || |||| |||||| | | ||||
Sbjct: 135 tgagatatgtattgtgaattgaagattttagtgaataataaaatatttgaaagaaaattg 194
Query: 260 cgccctctggtattccagggggcatgcctgtttgagcgtcatttctctctcaaacctttg 319
| | ||||||| |||||| ||| |||||||| || |||| | | | ||| ||||
Sbjct: 195 agaaatatggtattaaagggggaatgaatgtttgagagtaatttatatataaaaaatttg 254
Query: 320 ggtttggtagtgagtgatactcgtttttcgggttaacttgamagtggctagccgttgcct 379
||||||||||||||||||| | |||||| ||||||| |||| ||||| ||| |||| |
Sbjct: 255 ggtttggtagtgagtgataatagtttttagggttaaattgaaagtggatagaagttgaat 314
Query: 380 tctgcgtgagcggngctgcgtgtcaagtctatggactcgactcttgcacatctacgtctt 439
| || |||| || | || |||| |||| |||||| | || | ||| | || || || ||
Sbjct: 315 tatgagtgaaagg-gatgagtgtaaagtatatggaatagaatattgaaaatataagtatt 373
Query: 440 aggtttgcgccaattcgtggtaagctagggtcaatgagcttataggtgttataaagactc 499
||||||| | |||| |||||||| |||||| |||||| |||||||||||||||||| |
Sbjct: 374 aggtttgagaaaattagtggtaagatagggtaaatgagattataggtgttataaagaata 433
Query: 500 gctggtgtttgtctccttgaggcatacggcttaatcaaaactctcaaagtttgacctcaa 559
| |||||||||| | |||||| ||| || ||||| |||| | | ||||||||| | ||
Sbjct: 434 gatggtgtttgtataattgaggaataaggattaataaaaaatataaaagtttgaaataaa 493
Query: 560 atcaggtaggaatacccgctgaacttaagcatatcaataagcggaggaaaagamaccaac 619
|| ||||||||||| | |||| ||||| |||| |||||| ||||||||||| | ||
Sbjct: 494 ataaggtaggaataaaagatgaaattaagaatataaataagaggaggaaaagaaaaaaaa 553
Query: 620 cgggattgccttagtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgtc 679
||||||| ||||||| || |||||||| || ||||| | ||||||||||| ||| ||
Sbjct: 554 agggattgaattagtaaaggagagtgaagaggaaaaagataaaatttgaaatatggagta 613
Query: 680 ttcgacgtccgagttgtaatttgaagaaggcaactttgtagctggtccttgtctatgttc 739
|| || || |||||||||||||||||||| || ||||||| |||| |||| ||||||
Sbjct: 614 ttagaagtaagagttgtaatttgaagaaggaaaatttgtagatggtaattgtatatgtta 673
Query: 740 cttggaacaggacgtcatagagggtgagaatcccgtgtggcgaggatcccagttatttgt 799
|||||| |||| || ||||||||||||||| |||||| |||||| ||| ||||||
Sbjct: 674 attggaaaaggaagtaatagagggtgagaataaagtgtggagaggataaaagtaatttgt 733
Query: 800 aaagtgctttcgacgagtcgagttgtttgggaa 832
|||||| ||| || |||| ||||||||||||||
Sbjct: 734 aaagtgatttagaagagtagagttgtttgggaa 766
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6139
Number of Sequences: 1807
Number of extensions: 6139
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (99.9 bits)